Monday, January 26, 2015

BACE, Curto - Phylogeny

Used ARB-Silva SINA to align sequences and ARB to generate phylogeny

***May take out sequences (see below post; specifically AB_3.17L, AB_3.19L, AB_3.27L) that do not have full 16S gene - do not fit great into phylogeny


EDIT: new phylogeny with scale generated by ARB tree generator 


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1 comment:

  1. Jen MartinyJanuary 26, 2015 at 7:53 PM

    This looks great, Alex. Right now you have a tree that just shows the relationships between sequences. Can you make one with a scale bar that represents how many base pairs have changed? I can help you figure out options in arb (or some other program) if you have trouble figuring it out.

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